The complete genome sequence of Xanthomonas theicola, the causal agent of canker on tea plants, reveals novel secretion systems in clade-1 xanthomonads.
Identifieur interne : 000030 ( Main/Exploration ); précédent : 000029; suivant : 000031The complete genome sequence of Xanthomonas theicola, the causal agent of canker on tea plants, reveals novel secretion systems in clade-1 xanthomonads.
Auteurs : Ralf Koebnik [France] ; Daiva Burokiene [Lituanie] ; Claude Bragard [Belgique] ; Christine Chang [Oman] ; Marion Fischer-Le Saux [France] ; Roland Kölliker [Suisse] ; Jillian Lang [États-Unis] ; Jan Leach [États-Unis] ; Emily Luna [États-Unis] ; Perrine Portier [France] ; Angeliki Sagia [France, Oman] ; Janet Ziegle [Oman] ; Stephen Philip Cohen [États-Unis] ; Jonathan Jacobs [États-Unis]Source :
- Phytopathology [ 0031-949X ] ; 2020.
Abstract
Xanthomonas theicola is the causal agent of bacterial canker on tea plants. There is no complete genome sequence available for X. theicola, a close relative of the species X. translucens and X. hyacinthi, thus limiting basic research for this group of pathogens. Here we release a high-quality complete genome sequence for the X. theicola type strain, CFBP 4691T. Single-molecule real-time sequencing with a mean coverage of 264X revealed two contigs of 4,744,641 bp (chromosome) and 40,955 bp (plasmid) in size. Genome mining revealed the presence of non-ribosomal peptide synthases, two CRISPR systems, the Xps type 2 secretion system, and the Hrp type 3 secretion system. Surprisingly, this strain encodes an additional type 2 secretion system and a novel type 3 secretion system with enigmatic function, hitherto undescribed for xanthomonads. Four type 3 effector genes were found on complete or partial transposons, suggesting a role of transposons in effector gene evolution and spread. This genome sequence fills an important gap to better understand the biology and evolution of the early-branching xanthomonads, also known as clade-1 xanthomonads.
DOI: 10.1094/PHYTO-07-20-0273-SC
PubMed: 32997607
Affiliations:
- Belgique, France, Lituanie, Oman, Suisse, États-Unis
- Colorado, Pays de la Loire, Province du Brabant wallon, Région wallonne
- Angers, Louvain-la-Neuve
- Université catholique de Louvain, Université d'Angers
Links toward previous steps (curation, corpus...)
Le document en format XML
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<front><div type="abstract" xml:lang="en">Xanthomonas theicola is the causal agent of bacterial canker on tea plants. There is no complete genome sequence available for X. theicola, a close relative of the species X. translucens and X. hyacinthi, thus limiting basic research for this group of pathogens. Here we release a high-quality complete genome sequence for the X. theicola type strain, CFBP 4691T. Single-molecule real-time sequencing with a mean coverage of 264X revealed two contigs of 4,744,641 bp (chromosome) and 40,955 bp (plasmid) in size. Genome mining revealed the presence of non-ribosomal peptide synthases, two CRISPR systems, the Xps type 2 secretion system, and the Hrp type 3 secretion system. Surprisingly, this strain encodes an additional type 2 secretion system and a novel type 3 secretion system with enigmatic function, hitherto undescribed for xanthomonads. Four type 3 effector genes were found on complete or partial transposons, suggesting a role of transposons in effector gene evolution and spread. This genome sequence fills an important gap to better understand the biology and evolution of the early-branching xanthomonads, also known as clade-1 xanthomonads.</div>
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</Journal>
<ArticleTitle>The complete genome sequence of Xanthomonas theicola, the causal agent of canker on tea plants, reveals novel secretion systems in clade-1 xanthomonads.</ArticleTitle>
<ELocationID EIdType="doi" ValidYN="Y">10.1094/PHYTO-07-20-0273-SC</ELocationID>
<Abstract><AbstractText>Xanthomonas theicola is the causal agent of bacterial canker on tea plants. There is no complete genome sequence available for X. theicola, a close relative of the species X. translucens and X. hyacinthi, thus limiting basic research for this group of pathogens. Here we release a high-quality complete genome sequence for the X. theicola type strain, CFBP 4691T. Single-molecule real-time sequencing with a mean coverage of 264X revealed two contigs of 4,744,641 bp (chromosome) and 40,955 bp (plasmid) in size. Genome mining revealed the presence of non-ribosomal peptide synthases, two CRISPR systems, the Xps type 2 secretion system, and the Hrp type 3 secretion system. Surprisingly, this strain encodes an additional type 2 secretion system and a novel type 3 secretion system with enigmatic function, hitherto undescribed for xanthomonads. Four type 3 effector genes were found on complete or partial transposons, suggesting a role of transposons in effector gene evolution and spread. This genome sequence fills an important gap to better understand the biology and evolution of the early-branching xanthomonads, also known as clade-1 xanthomonads.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Koebnik</LastName>
<ForeName>Ralf</ForeName>
<Initials>R</Initials>
<AffiliationInfo><Affiliation>UMR IPME, 911, Avenue Agropolis, Montpellier, France, 34394; ralf.koebnik@ird.fr.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Burokiene</LastName>
<ForeName>Daiva</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>Nature Research Centre, 282393, Institute of Botany, Laboratory of Plant Pathology, Vilnius, Lithuania; daiva.burokiene@gamtc.lt.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Bragard</LastName>
<ForeName>Claude</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>Université catholique de Louvain, 83415, Earth and Life Institute, Louvain-la-Neuve, Walloon Brabant, Belgium; claude.bragard@uclouvain.be.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Chang</LastName>
<ForeName>Christine</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>Pacific Biosciences Inc, 105480, Menlo Park, California, United States; cchang@pacificbiosciences.com.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Fischer-Le Saux</LastName>
<ForeName>Marion</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Institut de Recherche en Horticulture et Semences, 98754, Université d'Angers, INRAE, Institut Agro, SFR 4207 QuaSaV, Angers, Pays de la Loire, France; marion.le-saux@inrae.fr.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Kölliker</LastName>
<ForeName>Roland</ForeName>
<Initials>R</Initials>
<AffiliationInfo><Affiliation>ETH Zürich, 27219, 6 Institute of Agricultural Sciences, Molecular Plant Breeding, Zurich, ZH, Switzerland; roland.koelliker@usys.ethz.ch.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Lang</LastName>
<ForeName>Jillian</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Colorado State University, 3447, Department of Agricultural Biology, Fort Collins, Colorado, United States; jillian.lang@colostate.edu.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Leach</LastName>
<ForeName>Jan</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Colorado State University, 3447, Department of Agricultural Biology, Fort Collins, Colorado, United States; Jan.Leach@colostate.edu.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Luna</LastName>
<ForeName>Emily</ForeName>
<Initials>E</Initials>
<AffiliationInfo><Affiliation>Colorado State University, 3447, Department of Agricultural Biology, Fort Collins, Colorado, United States; emily.peachey@colostate.edu.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Portier</LastName>
<ForeName>Perrine</ForeName>
<Initials>P</Initials>
<AffiliationInfo><Affiliation>Institut de Recherche en Horticulture et Semences, 98754, Université d'Angers, INRAE, Institut Agro, SFR 4207 QuaSaV, Angers, Pays de la Loire, France; perrine.portier@angers.inra.fr.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Sagia</LastName>
<ForeName>Angeliki</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>IRD Centre de Montpellier, 98751, UMR IPME, Montpellier, Occitanie, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>University of Crete, 37777, Department of Biology, Heraklion, Crete, Greece; sagia.angeliki@gmail.com.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ziegle</LastName>
<ForeName>Janet</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Pacific Biosciences Inc, 105480, Menlo Park, California, United States; jziegle@pacificbiosciences.com.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Cohen</LastName>
<ForeName>Stephen Philip</ForeName>
<Initials>SP</Initials>
<AffiliationInfo><Affiliation>The Ohio State University, 2647, Department of Plant Pathology, 201 Kottman Hall, 2021 Coffey Rd, Columbus, Ohio, United States, 43210; cohen.1107@osu.edu.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Jacobs</LastName>
<ForeName>Jonathan</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Ohio State University, 2647, Plant Pathology, 2021 Coffey Road, Columbus, Ohio, United States, 43210-1132; jacobs.1080@osu.edu.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2020</Year>
<Month>09</Month>
<Day>30</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>United States</Country>
<MedlineTA>Phytopathology</MedlineTA>
<NlmUniqueID>9427222</NlmUniqueID>
<ISSNLinking>0031-949X</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Bacterial Pathogens</Keyword>
<Keyword MajorTopicYN="N">Evolution</Keyword>
<Keyword MajorTopicYN="N">Genomics</Keyword>
<Keyword MajorTopicYN="N">Host Parasite Interactions</Keyword>
<Keyword MajorTopicYN="N">Microbe-genome Sequencing</Keyword>
<Keyword MajorTopicYN="N">Pathogen Effectors</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2020</Year>
<Month>10</Month>
<Day>1</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2020</Year>
<Month>10</Month>
<Day>1</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2020</Year>
<Month>9</Month>
<Day>30</Day>
<Hour>17</Hour>
<Minute>11</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>aheadofprint</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">32997607</ArticleId>
<ArticleId IdType="doi">10.1094/PHYTO-07-20-0273-SC</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>Belgique</li>
<li>France</li>
<li>Lituanie</li>
<li>Oman</li>
<li>Suisse</li>
<li>États-Unis</li>
</country>
<region><li>Colorado</li>
<li>Pays de la Loire</li>
<li>Province du Brabant wallon</li>
<li>Région wallonne</li>
</region>
<settlement><li>Angers</li>
<li>Louvain-la-Neuve</li>
</settlement>
<orgName><li>Université catholique de Louvain</li>
<li>Université d'Angers</li>
</orgName>
</list>
<tree><country name="France"><noRegion><name sortKey="Koebnik, Ralf" sort="Koebnik, Ralf" uniqKey="Koebnik R" first="Ralf" last="Koebnik">Ralf Koebnik</name>
</noRegion>
<name sortKey="Fischer Le Saux, Marion" sort="Fischer Le Saux, Marion" uniqKey="Fischer Le Saux M" first="Marion" last="Fischer-Le Saux">Marion Fischer-Le Saux</name>
<name sortKey="Portier, Perrine" sort="Portier, Perrine" uniqKey="Portier P" first="Perrine" last="Portier">Perrine Portier</name>
<name sortKey="Sagia, Angeliki" sort="Sagia, Angeliki" uniqKey="Sagia A" first="Angeliki" last="Sagia">Angeliki Sagia</name>
</country>
<country name="Lituanie"><noRegion><name sortKey="Burokiene, Daiva" sort="Burokiene, Daiva" uniqKey="Burokiene D" first="Daiva" last="Burokiene">Daiva Burokiene</name>
</noRegion>
</country>
<country name="Belgique"><region name="Région wallonne"><name sortKey="Bragard, Claude" sort="Bragard, Claude" uniqKey="Bragard C" first="Claude" last="Bragard">Claude Bragard</name>
</region>
</country>
<country name="Oman"><noRegion><name sortKey="Chang, Christine" sort="Chang, Christine" uniqKey="Chang C" first="Christine" last="Chang">Christine Chang</name>
</noRegion>
<name sortKey="Sagia, Angeliki" sort="Sagia, Angeliki" uniqKey="Sagia A" first="Angeliki" last="Sagia">Angeliki Sagia</name>
<name sortKey="Ziegle, Janet" sort="Ziegle, Janet" uniqKey="Ziegle J" first="Janet" last="Ziegle">Janet Ziegle</name>
</country>
<country name="Suisse"><noRegion><name sortKey="Kolliker, Roland" sort="Kolliker, Roland" uniqKey="Kolliker R" first="Roland" last="Kölliker">Roland Kölliker</name>
</noRegion>
</country>
<country name="États-Unis"><region name="Colorado"><name sortKey="Lang, Jillian" sort="Lang, Jillian" uniqKey="Lang J" first="Jillian" last="Lang">Jillian Lang</name>
</region>
<name sortKey="Cohen, Stephen Philip" sort="Cohen, Stephen Philip" uniqKey="Cohen S" first="Stephen Philip" last="Cohen">Stephen Philip Cohen</name>
<name sortKey="Jacobs, Jonathan" sort="Jacobs, Jonathan" uniqKey="Jacobs J" first="Jonathan" last="Jacobs">Jonathan Jacobs</name>
<name sortKey="Leach, Jan" sort="Leach, Jan" uniqKey="Leach J" first="Jan" last="Leach">Jan Leach</name>
<name sortKey="Luna, Emily" sort="Luna, Emily" uniqKey="Luna E" first="Emily" last="Luna">Emily Luna</name>
</country>
</tree>
</affiliations>
</record>
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